Wessels, Lodewyk F.: search on Z-Library

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1

Cross-validated Cox regression on microarray gene expression data

Hans C. van Houwelingen, Tako Bruinsma, Augustinus A. M. Hart, Laura J. van't Veer, Lodewyk F. A. Wessels

Journal:

Statistics in Medicine

Year:

2006

Language:

english

File:

PDF, 230 KB

english, 2006

2

Synthetic Lethality in Cancer Therapeutics

Beijersbergen, Roderick L., Wessels, Lodewyk F.A., Bernards, René

Journal:

Annual Review of Cancer Biology

Year:

2017

Language:

english

File:

PDF, 1.16 MB

english, 2017

3

An expression profile for diagnosis of lymph node metastases from primary head and neck squamous cell carcinomas

Roepman, Paul, Wessels, Lodewyk F A, Kettelarij, Nienke, Kemmeren, Patrick, Miles, Antony J, Lijnzaad, Philip, Tilanus, Marcel G J, Koole, Ronald, Hordijk, Gert-Jan, van der Vliet, Peter C

Journal:

Nature Genetics

Year:

2005

Language:

english

File:

PDF, 328 KB

english, 2005

4

Identifying Epistasis in Cancer Genomes: A Delicate Affair

van de Haar, Joris, Canisius, Sander, Yu, Michael K., Voest, Emile E., Wessels, Lodewyk F.A., Ideker, Trey

Journal:

Year:

2019

Language:

english

File:

PDF, 4.02 MB

english, 2019

5

Chromatin Position Effects Assayed by Thousands of Reporters Integrated in Parallel

Akhtar, Waseem, de Jong, Johann, Pindyurin, Alexey V., Pagie, Ludo, Meuleman, Wouter, de Ridder, Jeroen, Berns, Anton, Wessels, Lodewyk F.A., van Lohuizen, Maarten, van Steensel, Bas

Journal:

Year:

2013

Language:

english

File:

PDF, 8.90 MB

english, 2013

6

Complementary value of contralateral parenchymal enhancement on DCE-MRI to prognostic models and molecular assays in high-risk ER+HER2- breast cancer

van der Velden, Bas H.M., Elias, Sjoerd G., Bismeijer, Tycho, Loo, Claudette E, Viergever, Max A., Wessels, Lodewyk F.A., Gilhuijs, Kenneth G.A.

Journal:

Clinical Cancer Research

Year:

2017

Language:

english

File:

PDF, 6.30 MB

english, 2017

7

Principal component analysis of binary genomics data

Song, Yipeng, Westerhuis, Johan A, Aben, Nanne, Michaut, Magali, Wessels, Lodewyk F A, Smilde, Age K

Journal:

Briefings in Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

8

[Lecture Notes in Computer Science] Pattern Recognition in Bioinformatics Volume 7036 || Biclustering of Expression Microarray Data Using Affinity Propagation

Loog, Marco, Wessels, Lodewyk, Reinders, Marcel J. T., de Ridder, Dick

Year:

2011

Language:

english

File:

PDF, 306 KB

english, 2011

9

Detecting Statistically Significant Common Insertion Sites in Retroviral Insertional Mutagenesis Screens

de Ridder, Jeroen, Uren, Anthony, Kool, Jaap, Reinders, Marcel, Wessels, Lodewyk

Journal:

PLoS Computational Biology

Year:

2006

Language:

english

File:

PDF, 1.11 MB

english, 2006

10

OncoScape: Exploring the cancer aberration landscape by genomic data fusion

Schlicker, Andreas, Michaut, Magali, Rahman, Rubayte, Wessels, Lodewyk F. A.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.58 MB

english, 2016

11

Random subspace method for multivariate feature selection

Carmen Lai, Marcel J.T. Reinders, Lodewyk Wessels

Journal:

Pattern Recognition Letters

Year:

2006

Language:

english

File:

PDF, 207 KB

english, 2006

12

Analysis of mass spectrometry data using sub-spectra

Wouter Meuleman, Judith YMN Engwegen, Marie-Christine W Gast, Lodewyk FA Wessels, Marcel JT Reinders

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 504 KB

english, 2009

13

Orbital rhabdomyosarcoma presenting as an apparent orbital subperiosteal abscess

Riaz Y Seedat, Pieter D Hamilton, Lodewyk P de Jager, Wessel Strydom, Catherine A Beukes

Journal:

International Journal of Pediatric Otorhinolaryngology

Year:

2000

Language:

english

File:

PDF, 373 KB

english, 2000

14

Multiscale representation of genomic signals

Knijnenburg, Theo A, Ramsey, Stephen A, Berman, Benjamin P, Kennedy, Kathleen A, Smit, Arian F A, Wessels, Lodewyk F A, Laird, Peter W, Aderem, Alan, Shmulevich, Ilya

Journal:

Year:

2014

Language:

english

File:

PDF, 808 KB

english, 2014

15

A multilevel pan-cancer map links gene mutations to cancer hallmarks

Knijnenburg, Theo A., Bismeijer, Tycho, Wessels, Lodewyk F. A., Shmulevich, Ilya

Journal:

Chinese Journal of Cancer

Year:

2015

Language:

english

File:

PDF, 1.57 MB

english, 2015

16

Role of variant allele fraction and rare SNP filtering to improve cellular DNA repair endpoint association

Vossen, David M., Verhagen, Caroline V. M., Grénman, Reidar, Kluin, Roelof J. C., Verheij, Marcel, van den Brekel, Michiel W. M., Wessels, Lodewyk F. A., Vens, Conchita, Sobol, Robert W.

Journal:

Year:

2018

Language:

english

File:

PDF, 538 KB

english, 2018

17

iTOP: inferring the topology of omics data

Aben, Nanne, Westerhuis, Johan A, Song, Yipeng, Kiers, Henk A L, Michaut, Magali, Smilde, Age K, Wessels, Lodewyk F A

Journal:

Year:

2018

Language:

english

File:

PDF, 843 KB

english, 2018

18

Detection of Colorectal Cancer by Serum and Tissue Protein Profiling: A Prospective Study in a Population at Risk

Engwegen, Judith Y.M.N., Depla, Annekatrien C.T.M., Smits, Marianne E., Cats, Annemieke, Tuynman, Henriëtte, Van Heukelem, Henk A., Snel, Pleun, Meuleman, Wouter, Wessels, Lodewyk F., Schellens, Jan H

Journal:

Biomarker Insights

Year:

2008

Language:

english

File:

PDF, 370 KB

english, 2008

19

MMTV insertional mutagenesis identifies genes, gene families and pathways involved in mammary cancer

Theodorou, Vassiliki, Kimm, Melanie A, Boer, Mandy, Wessels, Lodewyk, Theelen, Wendy, Jonkers, Jos, Hilkens, John

Journal:

Nature Genetics

Year:

2007

Language:

english

File:

PDF, 284 KB

english, 2007

20

Classification in the presence of class noise using a probabilistic Kernel Fisher method

Yunlei Li, Lodewyk F.A. Wessels, Dick de Ridder, Marcel J.T. Reinders

Journal:

Pattern Recognition

Year:

2007

Language:

english

File:

PDF, 290 KB

english, 2007

21

Timely deposition of macromolecular structures is necessary for peer review

Joosten, Robbie P., Soueidan, Hayssam, Wessels, Lodewyk F. A., Perrakis, Anastassis

Journal:

Acta Crystallographica Section D Biological Crystallography

Year:

2013

Language:

english

File:

PDF, 2.39 MB

english, 2013

22

Corrigendum: Using TRIP for genome-wide position effect analysis in cultured cells

Akhtar, Waseem, Pindyurin, Alexey V, de Jong, Johann, Pagie, Ludo, ten Hoeve, Jelle, Berns, Anton, Wessels, Lodewyk F A, van Steensel, Bas, van Lohuizen, Maarten

Journal:

Nature Protocols

Year:

2015

Language:

english

File:

PDF, 538 KB

english, 2015

23

Prediction ofBRCA1-association in hereditary non-BRCA1/2breast carcinomas with array-CGH

Simon A. Joosse, Erik H. van Beers, Ivon H. G. Tielen, Hugo Horlings, Johannes L. Peterse, Nicoline Hoogerbrugge, Marjolijn J. Ligtenberg, Lodewyk F. A. Wessels, Priscilla Axwijk, Senno Verhoef, Frans

Journal:

Breast Cancer Research and Treatment

Year:

2009

Language:

english

File:

PDF, 562 KB

english, 2009

24

Pooling breast cancer datasets has a synergetic effect on classification performance and improves signature stability

Martin H van Vliet, Fabien Reyal, Hugo M Horlings, Marc J van de Vijver, Marcel JT Reinders, Lodewyk FA Wessels

Journal:

Year:

2008

Language:

english

File:

PDF, 536 KB

english, 2008

25

Molecular subtyping of breast cancer: ready to use?

Jorma de Ronde, Lodewyk Wessels, Jelle Wesseling

Journal:

The Lancet Oncology

Year:

2010

Language:

english

File:

PDF, 181 KB

english, 2010

26

Knowledge driven decomposition of tumor expression profiles

Martin H van Vliet, Lodewyk FA Wessels, Marcel JT Reinders

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 504 KB

english, 2009

27

Chemical profiling of the genome with anti-cancer drugs defines target specificities

Pang, Baoxu, de Jong, Johann, Qiao, Xiaohang, Wessels, Lodewyk F A, Neefjes, Jacques

Journal:

Nature Chemical Biology

Year:

2015

Language:

english

File:

PDF, 2.43 MB

english, 2015

28

MAP3K1 and MAP2K4 mutations are associated with sensitivity to MEK inhibitors in multiple cancer models

Xue, Zheng, Vis, Daniel J., Bruna, Alejandra, Sustic, Tonci, van Wageningen, Sake, Batra, Ankita Sati, Rueda, Oscar M., Bosdriesz, Evert, Caldas, Carlos, Wessels, Lodewyk F. A., Bernards, René

Journal:

Year:

2018

Language:

english

File:

PDF, 4.45 MB

english, 2018

29

Ubiquitin E3 Ligase Ring1b/Rnf2 of Polycomb Repressive Complex 1 Contributes to Stable Maintenance of Mouse Embryonic Stem Cells

van der Stoop, Petra, Boutsma, Erwin A., Hulsman, Danielle, Noback, Sonja, Heimerikx, Mike, Kerkhoven, Ron M., Voncken, J. Willem, Wessels, Lodewyk F. A., van Lohuizen, Maarten, Williams, Simon

Journal:

Year:

2008

Language:

english

File:

PDF, 626 KB

english, 2008

30

Converting a breast cancer microarray signature into a high-throughput diagnostic test

Annuska M Glas, Arno Floore, Leonie JMJ Delahaye, Anke T Witteveen, Rob CF Pover, Niels Bakx, Jaana ST Lahti-Domenici, Tako J Bruinsma, Marc O Warmoes, René Bernards, Lodewyk FA Wessels, Laura J Van't

Journal:

Year:

2006

Language:

english

File:

PDF, 3.68 MB

english, 2006

31

Quantitative copy number analysis by Multiplex Ligation-dependent Probe Amplification (MLPA) of BRCA1-associated breast cancer regions identifies BRCAness

Esther H Lips, Nadja Laddach, Suvi P Savola, Marieke A Vollebergh, Anne MM Oonk, Alex LT Imholz, Lodewyk FA Wessels, Jelle Wesseling, Petra M Nederlof, Sjoerd Rodenhuis

Journal:

Breast Cancer Research

Year:

2011

Language:

english

File:

PDF, 276 KB

english, 2011

32

Genomic patterns resemblingBRCA1- andBRCA2-mutated breast cancers predict benefit of intensified carboplatin-based chemotherapy

Vollebergh, Marieke A, Lips, Esther H, Nederlof, Petra M, Wessels, Lodewyk FA, Wesseling, Jelle, vd Vijver, Marc J, de Vries, Elisabeth GE, van Tinteren, Harm, Jonkers, Jos, Hauptmann, Michael, Rodenh

Journal:

Breast Cancer Research

Year:

2014

Language:

english

File:

PDF, 673 KB

english, 2014

33

Multilevel models improve precision and speed of IC 50 estimates

Vis, Daniel J, Bombardelli, Lorenzo, Lightfoot, Howard, Iorio, Francesco, Garnett, Mathew J, Wessels, Lodewyk FA

Journal:

Pharmacogenomics

Year:

2016

Language:

english

File:

PDF, 1.61 MB

english, 2016

34

Genomic data integration by WON-PARAFAC identifies interpretable factors for predicting drug-sensitivity in vivo

Kim, Yongsoo, Bismeijer, Tycho, Zwart, Wilbert, Wessels, Lodewyk F. A., Vis, Daniel J.

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 3.83 MB

english, 2019

35

Heterofusion: Fusing genomics data of different measurement scales

Smilde, Age K., Song, Yipeng, Westerhuis, Johan A., Kiers, Henk A. L., Aben, Nanne, Wessels, Lodewyk F. A.

Journal:

Journal of Chemometrics

Year:

2020

Language:

english

File:

PDF, 2.73 MB

english, 2020

36

Erratum to “Classification in the presence of class noise using a probabilistic kernel fisher method”: [Pattern Recognition 40 (12) 3349–3357]

Yunlei Li, Lodewyk F.A. Wessels, Dick de Ridder, Marcel J.T. Reinders

Journal:

Pattern Recognition

Year:

2008

Language:

english

File:

PDF, 80 KB

english, 2008

37

Concordance of clinical and molecular breast cancer subtyping in the context of preoperative chemotherapy response

Jorma J. de Ronde, Juliane Hannemann, Hans Halfwerk, Lennart Mulder, Marieke E. Straver, Marie-Jeanne T. F. D. Vrancken Peeters, Jelle Wesseling, Marc van de Vijver, Lodewyk F. A. Wessels, Sjoerd Rode

Journal:

Breast Cancer Research and Treatment

Year:

2010

Language:

english

File:

PDF, 189 KB

english, 2010

38

Concordance among Gene-Expression–Based Predictors for Breast Cancer

Fan, Cheng, Oh, Daniel S., Wessels, Lodewyk, Weigelt, Britta, Nuyten, Dimitry S.A., Nobel, Andrew B., van't Veer, Laura J., Perou, Charles M.

Journal:

Boston Medical and Surgical Journal

Year:

2006

Language:

english

File:

PDF, 279 KB

english, 2006

39

[Lecture Notes in Computer Science] Pattern Recognition in Bioinformatics Volume 7036 ||

Loog, Marco, Wessels, Lodewyk, Reinders, Marcel J. T., de Ridder, Dick

Year:

2011

Language:

english

File:

PDF, 12.82 MB

english, 2011

40

Corrigendum: Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

Guelen, Lars, Pagie, Ludo, Brasset, Emilie, Meuleman, Wouter, Faza, Marius B., Talhout, Wendy, Eussen, Bert H., de Klein, Annelies, Wessels, Lodewyk, de Laat, Wouter, van Steensel, Bas

Journal:

Year:

2013

File:

PDF, 27 KB

2013

41

Molecular Maps of the Reorganization of Genome-Nuclear Lamina Interactions during Differentiation

Daan Peric-Hupkes, Wouter Meuleman, Ludo Pagie, Sophia W.M. Bruggeman, Irina Solovei, Wim Brugman, Stefan Gräf, Paul Flicek, Ron M. Kerkhoven, Maarten van Lohuizen, Marcel Reinders, Lodewyk Wessels, B

Journal:

Year:

2010

Language:

english

File:

PDF, 1.54 MB

english, 2010

42

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

Guelen, Lars, Pagie, Ludo, Brasset, Emilie, Meuleman, Wouter, Faza, Marius B., Talhout, Wendy, Eussen, Bert H., de Klein, Annelies, Wessels, Lodewyk, de Laat, Wouter

Journal:

Year:

2008

Language:

english

File:

PDF, 1.27 MB

english, 2008

43

RUBIC identifies driver genes by detecting recurrent DNA copy number breaks

van Dyk, Ewald, Hoogstraat, Marlous, ten Hoeve, Jelle, Reinders, Marcel J. T., Wessels, Lodewyk F. A.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 866 KB

english, 2016

44

Identifying transposon insertions and their effects from RNA-sequencing data

de Ruiter, Julian R., Kas, Sjors M., Schut, Eva, Adams, David J., Koudijs, Marco J., Wessels, Lodewyk F. A., Jonkers, Jos

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

45

A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets

Carmen Lai, Marcel JT Reinders, Laura J van't Veer, Lodewyk FA Wessels

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 333 KB

english, 2006

46

SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets

Carmen Lai, Hugo M Horlings, Marc J van de Vijver, Eric H van Beers, Petra M Nederlof, Lodewyk FA Wessels, Marcel JT Reinders

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.07 MB

english, 2007

47

Androgen receptor profiling predicts prostate cancer outcome

Stelloo, Suzan, Nevedomskaya, Ekaterina, van der Poel, Henk G, de Jong, Jeroen, van Leenders, Geert JLH, Jenster, Guido, Wessels, Lodewyk FA, Bergman, Andries M, Zwart, Wilbert

Journal:

EMBO Molecular Medicine

Year:

2015

Language:

english

File:

PDF, 3.16 MB

english, 2015

48

Modelling Signalling Networks from Perturbation Data

Dorel, Mathurin, Klinger, Bertram, Gross, Torsten, Sieber, Anja, Prahallad, Anirudh, Bosdriesz, Evert, Wessels, Lodewyk, Blüthgen, Nils, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 524 KB

english, 2018

49

Functional categorization of BRCA1 variants of uncertain clinical significance in homologous recombination repair complementation assays

Bouwman, Peter, van der Heijden, Ingrid, van der Gulden, Hanneke, de Bruijn, Roebi, Braspenning, Merel E., Moghadasi, Setareh, Wessels, Lodewyk F.A., Segers, Karin, Badoer, Cindy, Vandernoot, Isabelle

Journal:

Clinical Cancer Research

Year:

2020

File:

PDF, 4.57 MB

2020

50

SMARCE1 suppresses EGFR expression and controls responses to MET and ALK inhibitors in lung cancer

Papadakis, Andreas I, Sun, Chong, Knijnenburg, Theo A, Xue, Yibo, Grernrum, Wipawadee, Hölzel, Michael, Nijkamp, Wouter, Wessels, Lodewyk FA, Beijersbergen, Roderick L, Bernards, Rene, Huang, Sidong

Journal:

Year:

2015

Language:

english

File:

PDF, 2.10 MB

english, 2015

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